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GNU GREP and RIPGREP
The book heavily leans on examples to present features of grep as well as regular expressions one by one. It is recommended that you manually type each example and experiment with them. Understanding both the nature of sample input string and the output produced is essential. You should have prior experience working with command line and bash sh...
Bash Notes for Professionals
The Bash Notes for Professionals book is compiled from Stack Overflow Documentation, the content is written by the beautiful people at Stack Overflow....
The Linux Commands Handbook
The Linux Commands Handbook follows the 80/20 rule: learn in 20% of the time the 80% of a topic. The author find this approach gives a well-rounded overview. This book does not try to cover everything under the sun related to Linux and its commands. It focuses on the small core commands that you will use the 80% or 90% of the time, trying to sim...
Data and Text Processing for Health and Life Sciences
This book is a step-by-step introduction on how shell scripting can help solve many of the data processing tasks that Health and Life specialists face everyday with minimal software dependencies. The examples presented in the book show how simple command line tools can be used and combined to retrieve data and text from web resources, to filter and...
Ten Steps to Linux Survival
Linux systems are everywhere today, even in companies once considered "pure Windows." If you're a sysadmin, network administrator, or developer in a small Windows shop, you may have to jump in and fix a system problem when your site goes down. What if you have no Linux knowledge? This short guide provides tips to help you survive. ...
The Linux Command Line
The Linux Command Line takes you from your very first terminal keystrokes to writing full programs in Bash, the most popular Linux shell (or command line). Along the way you'll learn the timeless skills handed down by generations of experienced, mouse-shunning gurus: file navigation, environment configuration, command chaining, pattern matchin...
Bioinformatics for Evolutionary Biologists
This self-contained textbook covers fundamental aspects of sequence analysis in evolutionary biology, including sequence alignment, phylogeny reconstruction, and coalescent simulation. It addresses these aspects through a series of over 400 computer problems, ranging from elementary to research level to enable learning by doing. Students solve the ...
Linux commands Notes for Professionals
The Linux Notes for Professionals book is compiled from Stack Overflow Documentation, the content is written by the beautiful people at Stack Overflow....
Just Enough Linux
If you've toyed with Linux and never really caught on to what's happening or have used a graphical interface without really touching the command line this book is for you. The idea is to get you started on the process of using some of the commands available in Linux so that you: Feel comfortable running commands; You understand a littl...
GNU SED
The book heavily leans on examples to present features of sed as well as regular expressions one by one. It is recommended that you manually type each example and experiment with them. Understanding both the nature of sample input string and the output produced is essential. You should have prior experience working with command line and bash she...
Bash Guide
This guide aims to aid people interested in learning to work with BASH. It aspires to teach good practice techniques for using BASH, and writing simple scripts. This guide is targeted at beginning users. It assumes no advanced knowledge - just the ability to login to a Unix-like system and open a command-line (terminal) interface. It will help i...